Scientists have created a “living digital camera” that captures and stores images in DNA, the genetic code of all living things, reports a new study. The technique offers a novel approach to encoding digital information into biological material, an endeavor that has a host of potential future applications in computing and nanotechnology.
DNA, which stands for deoxyribonucleic acid, is a molecule that stores the genetic instructions for organisms using four nucleotides called adenine (A), thymine (T), guanine (G), and cytosine (C). In addition to providing a comprehensive guide to biological systems, the simple four-bit nature of DNA has attracted interest from scientists as a potential form of hardware for novel computing systems and data storage.
Now, researchers led by Cheng Kai Lim, a synthetic biologist at the National University of Singapore, have demonstrated that DNA can not only be used to take and store images, but that these pictures can later be retrieved via sequencing techniques.
By passing special 2D light through DNA samples, the researchers were able to create “a biological analogue to a digital camera” which they called BacCam, according to a study published last week in Nature Communications.
“The increasing integration between biological and digital interfaces has led to heightened interest in utilizing biological materials to store digital data, with the most promising one involving the storage of data within defined sequences of DNA that are created by de novo DNA synthesis,” said Lim and his colleagues in the study. “However, there is a lack of methods that can obviate the need for de novo DNA synthesis, which tends to be costly and inefficient.”
“Here, in this work, we detail a method of capturing 2-dimensional light patterns into DNA, by utilizing optogenetic circuits to record light exposure into DNA, encoding spatial locations with barcoding, and retrieving stored images via high-throughput next-generation sequencing,” the team said. “This work thus establishes a ‘living digital camera’, paving the way towards integrating biological systems with digital devices.”
Scientists have been ruminating on the computational potential of DNA for decades, and the market for applications of DNA storage are expected to grow in the coming years. At this point, most efforts along these lines involve in-vitro synthesis of DNA, which means that scientists make synthetic strands of genetic material that can be manipulated to store information. Though this process is well-tested, it is also expensive, complicated, and often riddled with errors, according to Lim and his colleagues.
“While there have been substantial advances in accelerating this process…DNA synthesis remains a bottleneck in the adoption of DNA as a data storage medium,” the team said in the study. “There is thus significant interest in developing ways of encoding information into DNA that can either supersede or circumvent DNA synthesis in its current form.”
To that end, Lim and his colleagues came up with a new technique that sidesteps the need to synthesize DNA by working with living cells from the bacteria species Escherichia coli that contain so-called “optogenetic” circuits capable of recording the presence or absence of light within DNA.
The researchers projected simple 96-bit images—including a smiley face and the word “BacCam”—into specific sites of DNA of the bacterial culture using blue light. The images were successfully stored into the DNA, and could be retrieved with near-perfect accuracy by sequencing the encoded strands. Moreover, the team was able to use red light to project a separate image on the same segments of DNA, demonstrating that multiple images could be captured, stored, and deciphered from a single genetic sample.
“To scale this workflow beyond a single wavelength of light, we incorporated an additional wavelength of light, doubling the amount of data that can be stored in a single, simultaneous capture and demonstrating the multiplexing potential of the system,” Lim and his colleagues said. “The results imply that the number of different images that can be stored in a [DNA] pool and retrieved in a single run is between 100 and 1000.”
“As the field of DNA data storage continues to progress, there is an increasing interest in bridging the interface between biological and digital systems,” the team concluded. “Our work showcases further applications of DNA data storage that recreate existing information capture devices in a biological form, providing the basis for continued innovation in information recording and storage.”
News
New study shows risk factors for dementia – virus causes deposits in the brain
Research into the causes of Alzheimer's is not yet complete. Now a new study shows that head trauma can activate herpes viruses and promote the disease. Frankfurt am Main – As a neurodegenerative disease, [...]
Are Machines Truly Thinking? Modern AI Systems Have Finally Achieved Turing’s Vision
Modern AI systems have fulfilled Turing’s vision of machines that learn and converse like humans, but challenges remain. A new paper highlights concerns about energy consumption and societal inequality while calling for more robust [...]
The Surprising Link Between Smell, Sound, and Emotions
New research reveals how smell and hearing interact in the brain to drive social behavior, using mouse maternal instincts as a model. Imagine you’re at a dinner party, but you can’t smell the food [...]
Brain cells age at different rates
As our body ages, not only joints, bones and muscles wear out, but also our nervous system. Nerve cells die, are no longer fully replaced, and the brain shrinks. "Aging is the most important risk factor [...]
Long COVID Breakthrough: Spike Proteins Persist in Brain for Years
Researchers have discovered that the SARS-CoV-2 spike protein persists in the brain and skull bone marrow for years after infection, potentially leading to chronic inflammation and neurodegenerative diseases. Researchers from Helmholtz Munich and Ludwig-Maximilians-Universität (LMU) have [...]
Water-Resistant Paper Could Revolutionize Packaging and Replace Plastic
A groundbreaking study showcases the creation of sustainable hydrophobic paper, enhanced by cellulose nanofibres and peptides, presenting a biodegradable alternative to petroleum-based materials, with potential uses in packaging and biomedical devices. Researchers aimed to [...]
NIH Scientists Discover Game-Changing Antibodies Against Malaria
Novel antibodies have the potential to pave the way for the next generation of malaria interventions. Researchers at the National Institutes of Health (NIH) have identified a novel class of antibodies that target a previously unexplored region [...]
Surprising Discovery: What If Some Cancer Genes Are Actually Protecting You?
A surprising discovery reveals that a gene previously thought to accelerate esophageal cancer actually helps protect against it initially. This pivotal study could lead to better prediction and prevention strategies tailored to individual genetic [...]
The Cancer Test That Exposes What Conventional Scans Miss
Researchers at UCLA have unveiled startling findings using PSMA-PET imaging that reveal nearly half of patients diagnosed with high-risk prostate cancer might actually have metastases missed by traditional imaging methods. This revelation could profoundly affect future [...]
Pupil size in sleep reveals how memories are processed
Cornell University researchers have found that the pupil is key to understanding how, and when, the brain forms strong, long-lasting memories. By studying mice equipped with brain electrodes and tiny eye-tracking cameras, the researchers [...]
Stanford’s Vaccine Breakthrough Boosts Flu Protection Like Never Before
Stanford Medicine researchers have developed a new method for influenza vaccination that encourages a robust immune response to all four common flu subtypes, potentially increasing the vaccine’s efficacy. In laboratory tests using human tonsil [...]
Water’s Worst Nightmare: The Rise of Superhydrophobic Materials
New materials with near-perfect water repellency offer potential for self-cleaning surfaces in cars and buildings. Scientists from Karlsruhe Institute of Technology (KIT) and the Indian Institute of Technology Guwahati (IITG) have developed a surface [...]
Japanese dentists test drug to help people with missing teeth regrow new ones
Japanese dentists are testing a groundbreaking drug that could enable people with missing teeth to grow new ones, reducing the need for dentures and implants, AFP recently reported. Katsu Takahashi, head of oral surgery at [...]
An AI system has reached human level on a test for ‘general intelligence’
A new artificial intelligence (AI) model has just achieved human-level results on a test designed to measure "general intelligence." On December 20, OpenAI's o3 system scored 85% on the ARC-AGI benchmark, well above the previous AI best [...]
According to Researchers, Your Breathing Patterns Could Hold the Key to Better Memory
Breathing synchronizes brain waves that support memory consolidation. A new study from Northwestern Medicine reports that, much like a conductor harmonizes various instruments in an orchestra to create a symphony, breathing synchronizes hippocampal brain waves to [...]
The Hidden Culprit Behind Alzheimer’s Revealed: Microglia Under the Microscope
Researchers at the CUNY Graduate Center have made a groundbreaking discovery in Alzheimer’s disease research, identifying a critical link between cellular stress in the brain and disease progression. Their study focuses on microglia, the brain’s immune [...]